Description

Creates vastly reduced representations of sequences using MinHash

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

List of input paired-end FastQ files

Output

name:type
description
pattern

mash

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.msh:file

Sketch output

*.{mash}

stats

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.mash_stats:file

Sketch statistics

*.{mash_stats}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

Fast sequence distance estimator that uses MinHash