modules/mash_sketch

Creates vastly reduced representations of sequences using MinHash

mashmash/sketchminhashreducedrepresentationssequencessketch

https://github.com/nf-core/modules/[...]/modules/nf-core/mash/sketch

Description

Creates vastly reduced representations of sequences using MinHash

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`reads:file`

List of input paired-end FastQ files

Output

name:type

description

pattern

`mash`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.msh:file`

Sketch output

*.{mash}

`stats`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.mash_stats:file`

Sketch statistics

*.{mash_stats}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

Fast sequence distance estimator that uses MinHash

github.com/marbl/Mash mash.readthedocs.io/en/latest/sketches https://github.com/marbl/Mash 10.1186/s13059-016-0997-x

modules/mash_sketch

Description

Input

`meta:map`

`reads:file`

Output

`mash`

`meta:map`

`*.msh:file`

`stats`

`meta:map`

`*.mash_stats:file`

`versions`

`versions.yml:file`

Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

included in

maintainer

get in touch

modules/mash_sketch

Description

Input

meta:map

reads:file

Output

mash

meta:map

*.msh:file

stats

meta:map

*.mash_stats:file

versions

versions.yml:file

Tools

mash https://github.com/marbl/Mash/blob/master/LICENSE.txt

included in

maintainer

get in touch

`meta:map`

`reads:file`

`mash`

`meta:map`

`*.msh:file`

`stats`

`meta:map`

`*.mash_stats:file`

`versions`

`versions.yml:file`

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt