Description

Creates vastly reduced representations of sequences using MinHash

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input paired-end FastQ files

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

mash (file)

Sketch output

*.{mash}

stats (file)

Sketch statistics

*.{mash_stats}

versions (file)

File containing software versions

versions.yml
included in
genomeassembler phageannotator
maintainer
Github user thanhleviet
get in touch
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Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

Fast sequence distance estimator that uses MinHash

github.com/marbl/Mash mash.readthedocs.io/en/latest/sketches https://github.com/marbl/Mash 10.1186/s13059-016-0997-x