Description

Quickly create a tree using Mash distances

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

seqs:file

FASTA, FASTQ, GenBank, or Mash sketch files

*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}

Output

name:type
description
pattern

tree

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.dnd:file

A Newick formatted tree file

*.{dnd}

matrix

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

A TSV matrix of pair-wise Mash distances

*.{tsv}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mashtree
GPL v3

Create a tree using Mash distances