Quickly create a tree using Mash distances
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
seqs
:file
FASTA, FASTQ, GenBank, or Mash sketch files
*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}
tree
*.dnd
A Newick formatted tree file
*.{dnd}
matrix
*.tsv
A TSV matrix of pair-wise Mash distances
*.{tsv}
versions_mashtree
${task.process}
:string
The name of the process
mashtree
The name of the tool
mashtree --version 2>&1 | sed 's/Mashtree //'
:eval
The expression to obtain the version of the tool
versions
Create a tree using Mash distances
