Description

Quickly create a tree using Mash distances

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

seqs (file)

FASTA, FASTQ, GenBank, or Mash sketch files

*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tree (file)

A Newick formatted tree file

*.{dnd}

matrix (file)

A TSV matrix of pair-wise Mash distances

*.{tsv}

Tools

mashtree
GPL v3

Create a tree using Mash distances