Analysis of mcr-1 gene (mobilized colistin resistance) for sequence variation
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
A fasta file.
*.{fasta.gz,fasta,fa.gz,fa,fna.gz,fna}
tsv{:bash}
*.tsv{:bash}
mcroni results in TSV format
*.tsv
fa{:bash}
*.fa{:bash}
mcr-1 matching sequences
*.fa
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Scripts for finding and processing promoter variants upstream of mcr-1
