Description

Analysis of mcr-1 gene (mobilized colistin resistance) for sequence variation

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

A fasta file.

*.{fasta.gz,fasta,fa.gz,fa,fna.gz,fna}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tsv (file)

mcroni results in TSV format

*.tsv

fa (file)

mcr-1 matching sequences

*.fa

Tools

mcroni
MIT

Scripts for finding and processing promoter variants upstream of mcr-1