A tool to create consensus sequences and variant calls from nanopore sequencing data
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input nanopore fasta/FastQ files
*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}
assembly{:bash}
Genome assembly
*.{fasta,fa}
*.fa.gz{:bash}
Polished genome assembly
*.fa.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Neural network sequence error correction.
