A tool to create consensus sequences and variant calls from nanopore sequencing data
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input nanopore fasta/FastQ files
*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}
assembly
Genome assembly
*.{fasta,fa}
*.fa.gz
Polished genome assembly
versions_medaka
${task.process}
:string
The name of the process
medaka
The name of the tool
medaka --version 2>&1 | sed "s/medaka //g"
:eval
The expression to obtain the version of the tool
versions
Neural network sequence error correction.
