A tool to create consensus sequences and variant calls from nanopore sequencing data
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
List of input nanopore fasta/FastQ files
*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}
assembly:file
Genome assembly
*.{fasta,fa}
assembly
*.fa.gz:file
Polished genome assembly
*.fa.gz
versions
versions.yml:file
File containing software versions
versions.yml
Neural network sequence error correction.
