modules/megan_rma2info

Analyses an RMA file and exports information in text format

meganrma6classificationconversion

https://github.com/nf-core/modules/[...]/modules/nf-core/megan/rma2info

Description

Analyses an RMA file and exports information in text format

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`rma6`
`:file`

RMA6 file from MEGAN or MALT

*.rma6

`megan_summary`
`:boolean`

Specify whether to generate an MEGAN summary file

Output

name:type

description

pattern

`txt`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.txt.gz`
`:file`

Compressed text file

*.txt.gz

`megan_summary`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.megan`
`:file`

Optionally generated MEGAN summary file

*.megan

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

megan
GPL >=3

A tool for studying the taxonomic content of a set of DNA reads

uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/megan6 software-ab.cs.uni-tuebingen.de/download/megan6/welcome https://github.com/husonlab/megan-ce 10.1371/journal.pcbi.1004957

modules/megan_rma2info

Description

Input

`meta`
`:map`

`rma6`
`:file`

`megan_summary`
`:boolean`

Output

`txt`

`meta`
`:map`

`*.txt.gz`
`:file`

`megan_summary`

`meta`
`:map`

`*.megan`
`:file`

`versions`

`versions.yml`
`:file`

Tools

megan
GPL >=3

included in

maintainer

get in touch

modules/megan_rma2info

Description

Input

meta:map

rma6:file

megan_summary:boolean

Output

txt

meta:map

*.txt.gz:file

megan_summary

meta:map

*.megan:file

versions

versions.yml:file

Tools

megan GPL >=3

included in

maintainer

get in touch

`meta`
`:map`

`rma6`
`:file`

`megan_summary`
`:boolean`

`txt`

`meta`
`:map`

`*.txt.gz`
`:file`

`megan_summary`

`meta`
`:map`

`*.megan`
`:file`

`versions`

`versions.yml`
`:file`

megan
GPL >=3