Description

Analyses an RMA file and exports information in text format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

rma6 (file)

RMA6 file from MEGAN or MALT

*.rma6

megan_summary (boolean)

Specify whether to generate an MEGAN summary file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Compressed text file

*.txt.gz

megan_summary (file)

Optionally generated MEGAN summary file

*.megan
included in
taxprofiler
author
Github user jfy133
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Tools

megan
GPL >=3

A tool for studying the taxonomic content of a set of DNA reads

uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/megan6 software-ab.cs.uni-tuebingen.de/download/megan6/welcome https://github.com/husonlab/megan-ce 10.1371/journal.pcbi.1004957