Description

Analyses an RMA file and exports information in text format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

rma6{:bash}

:file

RMA6 file from MEGAN or MALT

*.rma6

megan_summary{:bash}

:boolean

Specify whether to generate an MEGAN summary file

Output

name:type
description
pattern

txt{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt.gz{:bash}

:file

Compressed text file

*.txt.gz

megan_summary{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.megan{:bash}

:file

Optionally generated MEGAN summary file

*.megan

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml