Description

Serotyping of Neisseria meningitidis assemblies

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA assembly file

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tsv (file)

Tab-delimited result file

*.tsv

Tools

meningotype
GPL v3

In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis