Serotyping of Neisseria meningitidis assemblies
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
tsv
*.tsv
Tab-delimited result file
versions_meningotype
${task.process}
:string
The name of the process
meningotype
The name of the tool
meningotype --version 2>&1 | sed 's/^.*meningotype v//'
:eval
The expression to obtain the version of the tool
versions_biopython
biopython
python -c 'import Bio; print(Bio.__version__)'
versions
In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis
