A reimplemenation of Kat Comp to work with FastK databases
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastk1_hist{:bash}
:file
A histogram files from the program FastK
*.hist
fastk1_ktab{:bash}
Histogram ktab files from the program FastK (option -t)
*.ktab*
fastk2_hist{:bash}
fastk2_ktab{:bash}
filled{:bash}
*.fi.{png,pdf}
*.fi.{png,pdf}{:bash}
Comparison of Kmers between sample 1 and 2 in filled PNG or PDF format.
line{:bash}
*.ln.{png,pdf}{:bash}
Comparison of Kmers between sample 1 and 2 in line PNG or PDF format.
*.ln.{png,pdf}
stacked{:bash}
*.st.{png,pdf}{:bash}
Comparison of Kmers between sample 1 and 2 in stacked PNG or PDF format.
*.st.{png,pdf}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
FastK based version of Merqury
