Description

A reimplemenation of Kat Comp to work with FastK databases

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fastk1_hist:file

A histogram files from the program FastK

*.hist

fastk1_ktab:file

Histogram ktab files from the program FastK (option -t)

*.ktab*

fastk2_hist:file

A histogram files from the program FastK

*.hist

fastk2_ktab:file

Histogram ktab files from the program FastK (option -t)

*.ktab*

Output

name:type
description
pattern

filled_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fi.png:file

Comparison of Kmers between sample 1 and 2 in filled PNG format.

*.fi.png

line_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.ln.png:file

Comparison of Kmers between sample 1 and 2 in line PNG format.

*.ln.png

stacked_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.st.png:file

Comparison of Kmers between sample 1 and 2 in stacked PNG format.

*.st.png

filled_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fi.pdf:file

Comparison of Kmers between sample 1 and 2 in filled PDF format.

*.fi.pdf

line_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.ln.pdf:file

Comparison of Kmers between sample 1 and 2 in line PDF format.

*.ln.pdf

stacked_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.st.pdf:file

Comparison of Kmers between sample 1 and 2 in stacked PDF format.

*.st.pdf

versions

versions.yml:file

File containing software versions

versions.yml