A reimplemenation of Kat Comp to work with FastK databases
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fastk1_hist:file
A histogram files from the program FastK
*.hist
fastk1_ktab:file
Histogram ktab files from the program FastK (option -t)
*.ktab*
fastk2_hist:file
fastk2_ktab:file
filled_png
*.fi.png:file
Comparison of Kmers between sample 1 and 2 in filled PNG format.
*.fi.png
line_png
*.ln.png:file
Comparison of Kmers between sample 1 and 2 in line PNG format.
*.ln.png
stacked_png
*.st.png:file
Comparison of Kmers between sample 1 and 2 in stacked PNG format.
*.st.png
filled_pdf
*.fi.pdf:file
Comparison of Kmers between sample 1 and 2 in filled PDF format.
*.fi.pdf
line_pdf
*.ln.pdf:file
Comparison of Kmers between sample 1 and 2 in line PDF format.
*.ln.pdf
stacked_pdf
*.st.pdf:file
Comparison of Kmers between sample 1 and 2 in stacked PDF format.
*.st.pdf
versions
versions.yml:file
File containing software versions
versions.yml
FastK based version of Merqury