A reimplemenation of Kat Comp to work with FastK databases
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastk1_hist{:bash}
:file
A histogram files from the program FastK
*.hist
fastk1_ktab{:bash}
Histogram ktab files from the program FastK (option -t)
*.ktab*
fastk2_hist{:bash}
fastk2_ktab{:bash}
images{:bash}
*.fi.{png,pdf}
*.{png,pdf}{:bash}
Comparison of Kmers between sample 1 and 2 in PNG or PDF format.
*.{png,pdf}
versions_merquryfk{:bash}
${task.process}{:bash}
:string
The name of the process
merquryfk{:bash}
The name of the tool
1.2{:bash}
The expression to obtain the version of the tool
versions_fastk{:bash}
fastk{:bash}
versions_r{:bash}
R{:bash}
R --version | sed "1!d; s/.*version //; s/ .*//"{:bash}
:eval
versions{:bash}
FastK based version of Merqury
