Description

A reimplemenation of KatGC to work with FastK databases

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastk_hist (file)

A histogram files from the program FastK

*.hist

fastk_ktab (file)

ktab files from the program FastK

*.ktab*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

filled_gc_plot_png (file)

A filled GC content plot in PNG format

*.fi.png

filled_gc_plot_pdf (file)

A filled GC content plot in PDF format

*.fi.pdf

line_gc_plot_png (file)

A line GC content plot in PNG format

*.ln.png

line_gc_plot_pdf (file)

A line GC content plot in PDF format

*.ln.pdf

stacked_gc_plot_png (file)

A stacked GC content plot in PNG format

*.st.png

stacked_gc_plot_pdf (file)

A stacked GC content plot in PDF format

*.st.pdf
included in
genomeassembler
maintainer
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

merquryfk
https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE

FastK based version of Merqury

github.com/thegenemyers/MERQURY.FK https://github.com/thegenemyers/MERQURY.FK