FastK based version of Merqury
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
fastk_hist
A histogram files from the program FastK
*.hist
fastk_ktab
Histogram ktab files from the program FastK (option -t)
*.ktab*
assembly
Genome (primary) assembly files (fasta format)
.fasta
haplotigs
Assembly haplotigs (fasta format)
versions
File containing software versions
versions.yml
stats
Assembly statistics file
*.completeness.stats
bed
Assembly only kmer positions not supported by reads in bed format
*_only.bed
spectra_cn_fl_png
Unstacked copy number spectra filled plot in PNG format
*.spectra-cn.fl.png
spectra_cn_ln_png
Unstacked copy number spectra line plot in PNG format
*.spectra-cn.ln.png
spectra_cn_st_png
Stacked copy number spectra line plot in PNG format
*.spectra-cn.st.png
spectra_asm_fl_png
Unstacked assembly spectra filled plot in PNG format
*.spectra-asm.fl.png
spectra_asm_ln_png
Unstacked assembly spectra line plot in PNG format
*.spectra-asm.ln.png
spectra_asm_st_png
Stacked assembly spectra line plot in PNG format
*.spectra-asm.st.png
spectra_cn_fl_pdf
Unstacked copy number spectra filled plot in PDF format
*.spectra-cn.fl.pdf
spectra_cn_ln_pdf
Unstacked copy number spectra line plot in PDF format
*.spectra-cn.ln.pdf
spectra_cn_st_pdf
Stacked copy number spectra line plot in PDF format
*.spectra-cn.st.pdf
spectra_asm_fl_pdf
Unstacked assembly spectra filled plot in PDF format
*.spectra-asm.fl.pdf
spectra_asm_ln_pdf
Unstacked assembly spectra line plot in PDF format
*.spectra-asm.ln.pdf
spectra_asm_st_pdf
Stacked assembly spectra line plot in PDF format
*.spectra-asm.st.pdf
assembly_qv
error and qv table for each scaffold of the assembly
*.qv
qv
error and qv of each assembly as a whole
