Description

An improved version of Smudgeplot using FastK

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fastk_hist:file

A histogram files from the program FastK

*.hist

fastk_ktab:file

ktab files from the program FastK

*.ktab*

Output

name:type
description
pattern

filled_ploidy_plot_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fi.png:file

A filled ploidy plot in PNG format

*.fi.png

filled_ploidy_plot_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fi.pdf:file

A filled ploidy plot in PDF format

*.fi.pdf

line_ploidy_plot_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.ln.png:file

A line ploidy plot in PNG format

*.ln.png

line_ploidy_plot_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.ln.pdf:file

A lin4 ploidy plot in PDF format

*.ln.pdf

stacked_ploidy_plot_png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.st.png:file

A stacked ploidy plot in PNG format

*.st.png

stacked_ploidy_plot_pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.st.pdf:file

A stacked ploidy plot in PDF format

*.st.pdf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

merquryfk
https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE

FastK based version of Merqury