A genomic k-mer counter (and sequence utility) with nice features.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
kvalue{:bash}
:integer
An integer value of k to use as the k-mer value.
meryl_db{:bash}
*.meryl{:bash}
:directory
A Meryl k-mer database
*.meryl
versions_meryl{:bash}
${task.process}{:bash}
:string
The name of the process
meryl{:bash}
The name of the tool
meryl --version |& sed 's/meryl //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
