Description

A genomic k-mer counter (and sequence utility) with nice features.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

meryl_db (directory)

A Meryl k-mer database

*.meryldb
included in
genomeassembler
author
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

meryl
GPL

A genomic k-mer counter (and sequence utility) with nice features.

github.com/marbl/meryl meryl.readthedocs.io/en/latest/quick-start.html https://github.com/marbl/meryl