Description

A genomic k-mer counter (and sequence utility) with nice features.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads:file

List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.

kvalue:integer

An integer value of k to use as the k-mer value.

Output

name:type
description
pattern

meryl_db

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.meryl:directory

A Meryl k-mer database

*.meryl

versions

versions.yml:file

File containing software versions

versions.yml

Tools

meryl
GPL

A genomic k-mer counter (and sequence utility) with nice features.