modules/meryl_histogram

A genomic k-mer counter (and sequence utility) with nice features.

k-merhistogramreference-free

https://github.com/nf-core/modules/[...]/modules/nf-core/meryl/histogram

Description

A genomic k-mer counter (and sequence utility) with nice features.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`meryl_db:directory`

Meryl k-mer database

`kvalue:integer`

An integer value of k to use as the k-mer value.

Output

name:type

description

pattern

`hist`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.hist:file`

Histogram of k-mers

*.hist

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

meryl
GPL

A genomic k-mer counter (and sequence utility) with nice features.

github.com/marbl/meryl meryl.readthedocs.io/en/latest/quick-start https://github.com/marbl/meryl

modules/meryl_histogram

Description

Input

meta:map

meryl_db:directory

kvalue:integer

Output

hist

meta:map

*.hist:file

versions

versions.yml:file

Tools

meryl GPL

`meta:map`

`meryl_db:directory`

`kvalue:integer`

`hist`

`meta:map`

`*.hist:file`

`versions`

`versions.yml:file`

meryl
GPL