Description

A genomic k-mer counter (and sequence utility) with nice features.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

meryl_dbs

:directory

Meryl k-mer databases

kvalue

:integer

An integer value of k to use as the k-mer value.

Output

name:type
description
pattern

meryl_db

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.unionsum.meryl

:directory

A Meryl k-mer database that is the union sum of the input databases

*.unionsum.meryl

versions_meryl

${task.process}

:string

The name of the process

meryl

:string

The name of the tool

meryl --version |& sed 's/meryl //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

meryl

:string

The name of the tool

meryl --version |& sed 's/meryl //'

:eval

The expression to obtain the version of the tool

Tools

meryl
GPL

A genomic k-mer counter (and sequence utility) with nice features.