Description

A genomic k-mer counter (and sequence utility) with nice features.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

meryl_dbs{:bash}

:directory

Meryl k-mer databases

kvalue{:bash}

:integer

An integer value of k to use as the k-mer value.

Output

name:type
description
pattern

meryl_db{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.unionsum.meryl{:bash}

:directory

A Meryl k-mer database that is the union sum of the input databases

*.unionsum.meryl

versions_meryl{:bash}

${task.process}{:bash}

:string

The name of the process

meryl{:bash}

:string

The name of the tool

meryl --version |& sed 's/meryl //'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

meryl{:bash}

:string

The name of the tool

meryl --version |& sed 's/meryl //'{:bash}

:eval

The expression to obtain the version of the tool

Tools

meryl
GPL

A genomic k-mer counter (and sequence utility) with nice features.