Depth computation per contig step of metabat2
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
Sorted BAM file of reads aligned on the assembled contigs
*.bam
bai
BAM index file
*.bam.bai
depth
*.txt.gz
Text file listing the coverage per contig
.txt.gz
versions_metabat2
${task.process}
:string
The name of the process
metabat2
The name of the tool
metabat2 --help 2>&1 | sed -n "2s/.*:\([0-9]*\.[0-9]*\).*/\1/p"
:eval
The expression to obtain the version of the tool
versions
Metagenome binning
