Description

Depth computation per contig step of metabat2

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bam:file

Sorted BAM file of reads aligned on the assembled contigs

*.bam

bai:file

BAM index file

*.bam.bai

Output

name:type
description
pattern

depth

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt.gz:file

Text file listing the coverage per contig

.txt.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

metabat2
BSD-3-clause-LBNL

Metagenome binning