Description

Depth computation per contig step of metabat2

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

Sorted BAM file of reads aligned on the assembled contigs

*.bam

bai (file)

BAM index file

*.bam.bai

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

depth (file)

Text file listing the coverage per contig

.txt.gz
included in
mag
author
Github user maxibor
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Tools

metabat2
BSD-3-clause-LBNL

Metagenome binning

bitbucket.org/berkeleylab/metabat 10.7717/peerj.7359