Metagenome binning of contigs
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
Fasta file of the assembled contigs
*.{fa,fas,fasta,fna,fa.gz,fas.gz,fasta.gz,fna.gz}
depth:file
Optional text file listing the coverage per contig pre-generated by metabat2_jgisummarizebamcontigdepths
*.txt
tooshort
*.tooShort.fa.gz:file
Contigs that did not pass length filtering
*.tooShort.fa.gz
lowdepth
*.lowDepth.fa.gz:file
Contigs that did not have sufficient depth for binning
*.lowDepth.fa.gz
unbinned
*.unbinned.fa.gz:file
Contigs that pass length and depth filtering but could not be binned
*.unbinned.fa.gz
membership
*.tsv.gz:file
cluster memberships as a matrix format.
*.tsv.gz
fasta
*[!lowDepth|tooShort|unbinned].fa.gz:file
Bins created from assembled contigs in fasta file
*.fa.gz
versions
versions.yml:file
File containing software versions
versions.yml
Metagenome binning