Metagenome binning of contigs
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
Fasta file of the assembled contigs
*.{fa,fas,fasta,fna,fa.gz,fas.gz,fasta.gz,fna.gz}
depth
Optional text file listing the coverage per contig pre-generated by metabat2_jgisummarizebamcontigdepths
*.txt
versions
File containing software versions
versions.yml
Bins created from assembled contigs in fasta file
*.fa.gz
tooshort
Contigs that did not pass length filtering
*.tooShort.fa.gz
lowdepth
Contigs that did not have sufficient depth for binning
*.lowDepth.fa.gz
unbinned
Contigs that pass length and depth filtering but could not be binned
*.unbinned.fa.gz
membership
cluster memberships as a matrix format.
*.tsv.gz
Metagenome binning
