Metagenome binning of contigs
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Fasta file of the assembled contigs
*.{fa,fas,fasta,fna,fa.gz,fas.gz,fasta.gz,fna.gz}
depth
Optional text file listing the coverage per contig pre-generated by metabat2_jgisummarizebamcontigdepths
*.txt
tooshort
*.tooShort.fa.gz
Contigs that did not pass length filtering
lowdepth
*.lowDepth.fa.gz
Contigs that did not have sufficient depth for binning
unbinned
*.unbinned.fa.gz
Contigs that pass length and depth filtering but could not be binned
membership
*.tsv.gz
cluster memberships as a matrix format.
*[!lowDepth|tooShort|unbinned].fa.gz
Bins created from assembled contigs in fasta file
*.fa.gz
versions_metabat2
${task.process}
:string
The name of the process
metabat2
The name of the tool
metabat2 --help 2>&1 | sed -n "2s/.*:\([0-9]*\.[0-9]*\).*/\1/p"
:eval
The expression to obtain the version of the tool
versions
Metagenome binning
