Annotation of eukaryotic metagenomes using MetaEuk
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Nucleotide FASTA file for annotation
*.{fasta,fa,fasta.gz,fa.gz}
database
Either a fasta file containing protein sequences, or a directory containing an mmseqs2-formatted protein database
faa
${prefix}.fas
Protein FASTA file containing the exons from the input FASTA file
*.{fas}
codon
${prefix}.codon.fas
Nucleotide FASTA file of protein-coding sequences
*.{codon.fas}
tsv
*.tsv
TSV file containing locations of each protein coding sequence in the input fasta
*.headersMap.{tsv}
gff
*.gff
Annotation file in GFF format
*.{gff}
versions
versions.yml
File containing software versions
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
