Annotation of eukaryotic metagenomes using MetaEuk
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
Nucleotide FASTA file for annotation
*.{fasta,fa,fasta.gz,fa.gz}
database:file
Either a fasta file containing protein sequences, or a directory containing an mmseqs2-formatted protein database
faa
${prefix}.fas:file
Protein FASTA file containing the exons from the input FASTA file
*.{fas}
codon
${prefix}.codon.fas:file
Nucleotide FASTA file of protein-coding sequences
*.{codon.fas}
tsv
*.tsv:file
TSV file containing locations of each protein coding sequence in the input fasta
*.headersMap.{tsv}
gff
*.gff:file
Annotation file in GFF format
*.{gff}
versions
versions.yml:file
File containing software versions
versions.yml
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
