Annotation of eukaryotic metagenomes using MetaEuk
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Nucleotide FASTA file for annotation
*.{fasta,fa,fasta.gz,fa.gz}
database{:bash}
Either a fasta file containing protein sequences, or a directory containing an mmseqs2-formatted protein database
faa{:bash}
${prefix}.fas{:bash}
Protein FASTA file containing the exons from the input FASTA file
*.{fas}
codon{:bash}
${prefix}.codon.fas{:bash}
Nucleotide FASTA file of protein-coding sequences
*.{codon.fas}
tsv{:bash}
*.tsv{:bash}
TSV file containing locations of each protein coding sequence in the input fasta
*.headersMap.{tsv}
gff{:bash}
*.gff{:bash}
Annotation file in GFF format
*.{gff}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
