Description

Annotation of eukaryotic metagenomes using MetaEuk

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Nucleotide FASTA file for annotation

*.{fasta,fa,fasta.gz,fa.gz}

database (file)

Either a fasta file containing protein sequences, or a directory containing an mmseqs2-formatted protein database

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

faa (file)

Protein FASTA file containing the exons from the input FASTA file

*.{fas}

codon (file)

Nucleotide FASTA file of protein-coding sequences

*.{codon.fas}

tsv (file)

TSV file containing locations of each protein coding sequence in the input fasta

*.headersMap.{tsv}

gff (file)

Annotation file in GFF format

*.{gff}
included in
mag
author
Github user prototaxites
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Tools

metaeuk
GPL v3

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

github.com/soedinglab/metaeuk 10.1186/s40168-020-00808-x