Maps long reads to a metamaps database
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
Input fastq file containing query sequences
*.{fq,fastq,fastq.gz,fq.gz}
database
Database file in fasta format
*.{fa,fasta}
classification_res
*classification_res
Coordinates where reads map
*.{classification_res}
meta_file
*classification_res.meta
Statistics for mapping result
*.{classification_res.meta}
meta_unmappedreadsLengths
*classification_res.meta.unmappedReadsLengths
Statistics for length of unmapped reads
*.{classification_res.meta.unmappedReadsLengths}
para_file
*classification_res.parameters
Log with parameters
*.{classification_res.parameters}
versions
versions.yml
File containing software versions
MetaMaps is a tool for long-read metagenomic analysis
