Maps long reads to a metamaps database
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
Input fastq file containing query sequences
*.{fq,fastq,fastq.gz,fq.gz}
database{:bash}
Database file in fasta format
*.{fa,fasta}
classification_res{:bash}
*classification_res{:bash}
Coordinates where reads map
*.{classification_res}
meta_file{:bash}
*classification_res.meta{:bash}
Statistics for mapping result
*.{classification_res.meta}
meta_unmappedreadsLengths{:bash}
*classification_res.meta.unmappedReadsLengths{:bash}
Statistics for length of unmapped reads
*.{classification_res.meta.unmappedReadsLengths}
para_file{:bash}
*classification_res.parameters{:bash}
Log with parameters
*.{classification_res.parameters}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
MetaMaps is a tool for long-read metagenomic analysis
