Maps long reads to a metamaps database
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Input fastq file containing query sequences
*.{fq,fastq,fastq.gz,fq.gz}
database
Database file in fasta format
*.{fa,fasta}
versions
File containing software versions
versions.yml
classification_res
Coordinates where reads map
*.{classification_res}
meta_file
Statistics for mapping result
*.{classification_res.meta}
meta_unmappedreadsLengths
Statistics for length of unmapped reads
*.{classification_res.meta.unmappedReadsLengths}
para_file
Log with parameters
*.{classification_res.parameters}
MetaMaps is a tool for long-read metagenomic analysis
