Maps long reads to a metamaps database
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
Input fastq file containing query sequences
*.{fq,fastq,fastq.gz,fq.gz}
database:file
Database file in fasta format
*.{fa,fasta}
classification_res
*classification_res:file
Coordinates where reads map
*.{classification_res}
meta_file
*classification_res.meta:file
Statistics for mapping result
*.{classification_res.meta}
meta_unmappedreadsLengths
*classification_res.meta.unmappedReadsLengths:file
Statistics for length of unmapped reads
*.{classification_res.meta.unmappedReadsLengths}
para_file
*classification_res.parameters:file
Log with parameters
*.{classification_res.parameters}
versions
versions.yml:file
File containing software versions
versions.yml
MetaMaps is a tool for long-read metagenomic analysis
