Description

Merges output abundance tables from MetaPhlAn3

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

profiles:file

List of per-sample MetaPhlAn3 taxonomic abundance tables

*

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

${prefix}.txt:file

Combined MetaPhlAn3 table

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

metaphlan3
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance

huttenhower.sph.harvard.edu/metaphlan github.com/biobakery/MetaPhlAn 10.7554/eLife.65088
maintainer
Github user jfy133
get in touch
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