Merges output abundance tables from MetaPhlAn3
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
profiles
:file
List of per-sample MetaPhlAn3 taxonomic abundance tables
*
txt
${prefix}.txt
Combined MetaPhlAn3 table
*.txt
versions_metaphlan3
${task.process}
:string
The process the versions were collected from
metaphlan3
The tool name
metaphlan --version 2>&1 | cut -d ' ' -f 3
The command used to generate the version of the tool
versions
Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance
