Description

Build MetaPhlAn database for taxonomic profiling.

Input

No input parameters

Output

name:type
description
pattern

db

metaphlan_db_latest

:directory

Output directory containing the indexed METAPHLAN database

*/

versions_metaphlan

${task.process}

:string

The process the versions were collected from

metaphlan

:string

The tool name

metaphlan --version 2>&1 | cut -d ' ' -f 3

:string

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the versions were collected from

metaphlan

:string

The tool name

metaphlan --version 2>&1 | cut -d ' ' -f 3

:string

The command used to generate the version of the tool

Tools

metaphlan
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance