Description

Merges output abundance tables from MetaPhlAn4

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

profiles (file)

List of per-sample MetaPhlAn4 taxonomic abundance tables

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Combined MetaPhlAn4 table

*.txt

Tools

metaphlan4
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance