Description

Merges output abundance tables from MetaPhlAn4

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

profiles (file)

List of per-sample MetaPhlAn4 taxonomic abundance tables

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Combined MetaPhlAn4 table

*.txt
included in
taxprofiler
authors
Github user jfy133 Github user LilyAnderssonLee
get in touch
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Tools

metaphlan4
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance

huttenhower.sph.harvard.edu/metaphlan github.com/biobakery/MetaPhlAn 10.1038/s41587-023-01688-w