Description

Merges output abundance tables from MetaPhlAn4

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

profiles{:bash}

:file

List of per-sample MetaPhlAn4 taxonomic abundance tables

*

Output

name:type
description
pattern

txt{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.txt{:bash}

:file

Combined MetaPhlAn4 table

*.txt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

metaphlan4
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance