Description

Merges output abundance tables from MetaPhlAn4

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

profiles

:file

List of per-sample MetaPhlAn4 taxonomic abundance tables

*

Output

name:type
description
pattern

txt

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.txt

:file

Combined MetaPhlAn4 table

*.txt

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

metaphlan4
MIT License

Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance