Extracts per-base methylation metrics from alignments
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
Input genome fasta file
*.{fasta,fa}
fai
FASTA index file
*.fai
bam
BAM/CRAM file
*.{bam,cram}
bai
BAM/CRAM index file
*.{bai,crai}
bedgraph
bedGraph file, containing per-base methylation metrics
*.bedGraph
methylkit
methylKit file, containing per-base methylation metrics
*.methylKit
versions
File containing software versions
versions.yml
Methylation caller from MethylDackel, a (mostly) universal methylation extractor for methyl-seq experiments.