Description

Generates methylation bias plots from alignments

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input genome fasta file

*.{fasta,fa}

fai (file)

FASTA index file

*.{fai}

bam (file)

BAM/CRAM file

*.{bam,cram}

bai (file)

BAM/CRAM index file

*.{bai,crai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

txt (file)

Text file containing methylation bias

*.{txt}

versions (file)

File containing software versions

versions.yml

Tools

methyldackel
MIT

Read position methylation bias tools from MethylDackel, a (mostly) universal extractor for methyl-seq experiments.