Generates methylation bias plots from alignments
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM/CRAM file
*.{bam,cram}
bai
BAM/CRAM index file
*.{bai,crai}
meta2
fasta
Input genome fasta file
*.{fasta,fa}
fai
FASTA index file
*.{fai}
txt
*.mbias.txt
Text file containing methylation bias
*.{txt}
versions_methyldackel
${task.process}
:string
The name of the process
methyldackel
The name of the tool
MethylDackel --version 2>&1 | cut -f1 -d' '
:eval
The expression to obtain the version of the tool
versions
Read position methylation bias tools from MethylDackel, a (mostly) universal extractor for methyl-seq experiments.
