A tool to estimate bacterial species abundance
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Reads in FASTQ format
*.{fastq.gz}
db
A database formatted for MIDAS
*.{db}
mode
The mode to run MIDAS is
*
versions
File containing software versions
versions.yml
results
A directory of results from MIDAS run
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
