A tool to estimate bacterial species abundance
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
Reads in FASTQ format
*.{fastq.gz}
db:file
A database formatted for MIDAS
*.{db}
mode:string
The mode to run MIDAS is
*
results
results/*:file
A directory of results from MIDAS run
versions
versions.yml:file
File containing software versions
versions.yml
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
