A tool to estimate bacterial species abundance
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
Reads in FASTQ format
*.{fastq.gz}
meta2
Groovy Map containing database information e.g. [ id:‘test’]
db
A database formatted for MIDAS
*.{db}
mode
:string
The mode to run MIDAS is
*
results
${prefix}/*
A directory of results from MIDAS run
versions
versions.yml
File containing software versions
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
