Description

marks duplicate spots along gridline edges.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

spot_table (file)

tsv file containing one spot per row with order x,y,z,gene without column header.

*.{tsv,txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

versions (file)

File containing software versions

versions.yml

marked_dups_spots (file)

tsv file containing one spot per row, with duplicated spots labeled with “Duplicated” in their gene column.

*.{markedDups.txt}
included in
molkart
maintainer
Github user FloWuenne
get in touch
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Tools

mindagap
BSD 3-clause License

Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.

github.com/ViriatoII/MindaGap/blob/main/README.md https://github.com/ViriatoII/MindaGap