Description

marks duplicate spots along gridline edges.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

spot_table:file

tsv file containing one spot per row with order x,y,z,gene without column header.

*.{tsv,txt}

Output

name:type
description
pattern

marked_dups_spots

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*markedDups.txt:file

tsv file containing one spot per row, with duplicated spots labeled with “Duplicated” in their gene column.

*.{markedDups.txt}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mindagap
BSD 3-clause License

Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.