Description

Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

panorama:file

A tiff file containing gridlines as produced by Molecular Cartography imaging.

*.{tif,tiff}

Output

name:type
description
pattern

tiff

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{tif,tiff}:file

A tiff file with gridlines filled based on consecutive gaussian blurring.

*.{tiff}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mindagap
BSD-3-Clause license

Mindagap is a collection of tools to process multiplexed FISH data, such as produced by Resolve Biosciences Molecular Cartography.

github.com/ViriatoII/MindaGap github.com/ViriatoII/MindaGap/blob/main/README.md https://github.com/ViriatoII/MindaGap
included in
molkart
maintainers
Github user ViriatoII
Github user flowuenne
get in touch
Ask a question on Slack Open an issue on GitHub