Description

Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

panorama{:bash}

:file

A tiff file containing gridlines as produced by Molecular Cartography imaging.

*.{tif,tiff}

Output

name:type
description
pattern

tiff{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{tif,tiff}{:bash}

:file

A tiff file with gridlines filled based on consecutive gaussian blurring.

*.{tiff}

versions_mindagap{:bash}

${task.process}{:bash}

:string

The name of the process

mindagap{:bash}

:string

The name of the tool

mindagap.py test -v{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

mindagap{:bash}

:string

The name of the tool

mindagap.py test -v{:bash}

:eval

The expression to obtain the version of the tool

Tools

mindagap
BSD-3-Clause license

Mindagap is a collection of tools to process multiplexed FISH data, such as produced by Resolve Biosciences Molecular Cartography.

github.com/ViriatoII/MindaGap github.com/ViriatoII/MindaGap/blob/main/README.md https://github.com/ViriatoII/MindaGap
included in
molkart
maintainers
Github user ViriatoII
Github user flowuenne
get in touch
Ask a question on Slack Open an issue on GitHub