Minia is a short-read assembler based on a de Bruijn graph
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Input reads in FastQ format
*.{fastq.gz, fastq}
contigs
The assembled contigs
*.contigs.fa
unitigs
The assembled unitigs
*.unitigs.fa
h5
Minia output h5 file
*{.h5}
versions
File containing software versions
versions.yml
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
