Minia is a short-read assembler based on a de Bruijn graph
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
Input reads in FastQ format
*.{fastq.gz, fastq}
Output
name:type
description
pattern
contigs{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.contigs.fa{:bash}
:file
The assembled contigs
*.contigs.fa
unitigs{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.unitigs.fa{:bash}
:file
The assembled unitigs
*.unitigs.fa
h5{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.h5{:bash}
:file
Minia output h5 file
*{.h5}
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
minia
AGPL-3.0-or-later
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling
a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
