Minia is a short-read assembler based on a de Bruijn graph
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
reads{:bash}
:file
Input reads in FastQ format
*.{fastq.gz, fastq}
Output
name:type
description
pattern
contigs{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
*.contigs.fa.gz{:bash}
:file
The assembled contigs
*.contigs.fa.gz
unitigs{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
*.unitigs.fa.gz{:bash}
:file
The assembled unitigs
*.unitigs.fa.gz
h5{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
*.h5{:bash}
:file
Minia assembly graph in binary h5 format
*.h5
log{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
*-minia.log{:bash}
:file
Minia assembly log file
*-minia.log
versions_minia{:bash}
${task.process}{:bash}
:string
The name of the process
minia{:bash}
:string
The name of the tool
minia -v | sed -n 's/Minia version //p'{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
minia{:bash}
:string
The name of the tool
minia -v | sed -n 's/Minia version //p'{:bash}
:eval
The expression to obtain the version of the tool
Tools
minia
AGPL-3.0-or-later
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling
a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
