A very fast OLC-based de novo assembler for noisy long reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input PacBio/ONT FastQ files.
*.{fastq,fastq.gz,fq,fq.gz}
paf
Alignment in PAF format
*{.paf,.paf.gz}
versions
File containing software versions
versions.yml
gfa
Assembly graph
*.gfa.gz
assembly
Genome assembly
*.fasta.gz
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
