A very fast OLC-based de novo assembler for noisy long reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
List of input PacBio/ONT FastQ files.
*.{fastq,fastq.gz,fq,fq.gz}
paf:file
Alignment in PAF format
*{.paf,.paf.gz}
gfa
*.gfa.gz:file
Assembly graph
*.gfa.gz
assembly
*.fasta.gz:file
Genome assembly
*.fasta.gz
versions
versions.yml:file
File containing software versions
versions.yml
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
