Description

Provides fasta index required by minimap2 alignment.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

Reference database in FASTA format.

Output

name:type
description
pattern

index

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.mmi:file

Minimap2 fasta index.

*.mmi

versions

versions.yml:file

File containing software versions

versions.yml

Tools

minimap2
MIT

A versatile pairwise aligner for genomic and spliced nucleotide sequences.