Description

Provides fasta index required by minimap2 alignment.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Reference database in FASTA format.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

index (file)

Minimap2 fasta index.

*.mmi

versions (file)

File containing software versions

versions.yml

Tools

minimap2
MIT

A versatile pairwise aligner for genomic and spliced nucleotide sequences.