A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
pep:file
a fasta file contains one or multiple protein sequences
meta2:map
Groovy Map containing reference information
ref:file
Reference database in FASTA format or miniprot index format.
paf
*.paf:file
Alignment in PAF format
*.paf
gff
*.gff:file
Alignment in gff format
*.gff
versions
versions.yml:file
File containing software versions
versions.yml
A versatile pairwise aligner for genomic and protein sequences.
