A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
pep
a fasta file contains one or multiple protein sequences
meta2
Groovy Map containing reference information
ref
Reference database in FASTA format or miniprot index format.
paf
Alignment in PAF format
*.paf
gff
Alignment in gff format
*.gff
versions
File containing software versions
versions.yml
A versatile pairwise aligner for genomic and protein sequences.
