Description

Provides fasta index required by miniprot alignment.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mpi{:bash}

:file

miniprot fasta index.

*.mpi

versions_miniprot{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

miniprot{:bash}

:string

The tool name

miniprot --version{:bash}

:eval

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

miniprot{:bash}

:string

The tool name

miniprot --version{:bash}

:eval

The command used to generate the version of the tool

Tools

miniprot
MIT

A versatile pairwise aligner for genomic and protein sequences.