Description

Provides fasta index required by miniprot alignment.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mpi

:file

miniprot fasta index.

*.mpi

versions_miniprot

${task.process}

:string

The process the versions were collected from

miniprot

:string

The tool name

miniprot --version

:eval

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the versions were collected from

miniprot

:string

The tool name

miniprot --version

:eval

The command used to generate the version of the tool

Tools

miniprot
MIT

A versatile pairwise aligner for genomic and protein sequences.