Description

Provides fasta index required by miniprot alignment.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mpi{:bash}

:file

miniprot fasta index.

*.mpi

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

miniprot
MIT

A versatile pairwise aligner for genomic and protein sequences.