Description

miRanda is an algorithm for finding genomic targets for microRNAs

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

query:file

FASTA file containing the microRNA query sequences

*.{fa,fasta}

mirbase:file

FASTA file containing the sequence(s) to be scanned

*.{fa,fasta}

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.txt:file

Reformatted TXT file containing microRNA targets

*.{txt}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

miranda
GNU Public License

An algorithm for finding genomic targets for microRNAs