miRanda is an algorithm for finding genomic targets for microRNAs
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
query
:file
FASTA file containing the microRNA query sequences
*.{fa,fasta}
mirbase
FASTA file containing the sequence(s) to be scanned
txt
*.txt
Reformatted TXT file containing microRNA targets
*.{txt}
versions_miranda
${task.process}
:string
The name of the process
miranda
The name of the tool
miranda -v | grep 'miranda v' | sed 's/.*v\([0-9]\.[0-9][a-z]\).*/\1/'
:eval
The expression to obtain the version of the tool
versions
An algorithm for finding genomic targets for microRNAs
