Description

miRanda is an algorithm for finding genomic targets for microRNAs

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

query (file)

FASTA file containing the microRNA query sequences

*.{fa,fasta}

mirbase (file)

FASTA file containing the sequence(s) to be scanned

*.{fa,fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

txt (file)

Reformatted TXT file containing microRNA targets

*.{txt}

versions (file)

File containing software versions

versions.yml
included in
circrna
maintainer
Github user BarryDigby
get in touch
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Tools

miranda
GNU Public License

An algorithm for finding genomic targets for microRNAs

cbio.mskcc.org/miRNA2003/miranda 10.1186/gb-2003-5-1-r1