mirtop gff generates the GFF3 adapter format to capture miRNA variations
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
meta2:map
hairpin:file
Hairpin file
*.{fa,fasta}
meta3:map
gtf:file
GTF file
*.{gtf}
species:string
Species name of the GTF file
gff
mirtop/*mirtop.gff:file
GFF file
*.{gff}
versions
versions.yml:file
File containing software versions
versions.yml
Small RNA-seq annotation
