Description

Download a mitochondrial genome to be used as reference for MitoHiFi

Input

Name (Type)
Description
Pattern

species (string)

Latin name of the species for which a mitochondrial genome should be fetched

[A-Z]?[a-z]* [a-z]*

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

fasta (file)

Downloaded mitochondrial genome in Fasta format

*.{fasta,fa}

gb (file)

Downloaded mitochondrial genome in Genbank format

*.gb

Tools

findMitoReference.py
MIT

Fetch mitochondrial genome in Fasta and Genbank format from NCBI