Run Torsten Seemann’s classic MLST on a genome assembly
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta:file
Assembly fasta file
*.{fasta,fa,fna}
tsv
*.tsv:file
MLST calls in tsv format
*.{tsv}
versions
versions.yml:file
File containing software versions
versions.yml
Scan contig files against PubMLST typing schemes
