Run Torsten Seemann's classic MLST on a genome assembly
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
fasta
Assembly fasta file
*.{fasta,fa,fna}
versions
File containing software versions
versions.yml
tsv
MLST calls in tsv format
*.{tsv}
Scan contig files against PubMLST typing schemes
