Run Torsten Seemann’s classic MLST on a genome assembly
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Assembly fasta file
*.{fasta,fa,fna}
tsv{:bash}
*.tsv{:bash}
MLST calls in tsv format
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Scan contig files against PubMLST typing schemes
