Run Torsten Seemann’s classic MLST on a genome assembly
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Assembly fasta file
*.{fasta,fa,fna}
tsv
*.tsv
MLST calls in tsv format
*.{tsv}
versions
versions.yml
File containing software versions
Scan contig files against PubMLST typing schemes
