Description

Create an MMseqs database from an existing FASTA/Q file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

sequence:file

Input sequences in FASTA/Q (zipped or unzipped) format to parse into an mmseqs database

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,fastq,fastq.gz,fq,fq.gz}

Output

name:type
description
pattern

db

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

${prefix}/:directory

The created MMseqs2 database

versions

versions.yml:file

File containing software versions

versions.yml