Description

Create a MMseqs database from an existing FASTA/Q file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

sequence (file)

Input sequences in FASTA/Q format to be indexed

*.{fasta,fa,fna,fastq,fq}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db (directory)

The created MMseqs2 database

versions (file)

File containing software versions

versions.yml
author
Github user Joon-Klaps
get in touch
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Tools

mmseqs
GPL v3

MMseqs2: ultra fast and sensitive sequence search and clustering suite

github.com/soedinglab/MMseqs2 mmseqs.com/latest/userguide.pdf https://github.com/soedinglab/MMseqs2 10.1093/bioinformatics/btw006