Description

Create an MMseqs database from an existing FASTA/Q file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

sequence (file)

Input sequences in FASTA/Q (zipped or unzipped) format to parse into an mmseqs database

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,fastq,fastq.gz,fq,fq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db (directory)

The created MMseqs2 database

versions (file)

File containing software versions

versions.yml