modules/mmseqs_createtsv

Create a tsv file from a query and a target database as well as the result database

protein sequencedatabasesclusteringsearchingindexingmmseqs2tsv

https://github.com/nf-core/modules/[...]/modules/nf-core/mmseqs/createtsv

Description

Create a tsv file from a query and a target database as well as the result database

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`db_result`
`:directory`

an MMseqs2 database with result data

`meta2`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`db_query`
`:directory`

an MMseqs2 database with query data

`meta3`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`db_target`
`:directory`

an MMseqs2 database with target data

Output

name:type

description

pattern

`tsv`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.tsv`
`:file`

The resulting tsv file created using the query, target and result MMseqs databases

*.{tsv}

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

mmseqs
GPL v3

MMseqs2: ultra fast and sensitive sequence search and clustering suite

github.com/soedinglab/MMseqs2 mmseqs.com/latest/userguide.pdf https://github.com/soedinglab/MMseqs2 10.1093/bioinformatics/btw006

modules/mmseqs_createtsv

Description

Input

`meta`
`:map`

`db_result`
`:directory`

`meta2`
`:map`

`db_query`
`:directory`

`meta3`
`:map`

`db_target`
`:directory`

Output

`tsv`

`meta`
`:map`

`*.tsv`
`:file`

`versions`

`versions.yml`
`:file`

Tools

mmseqs
GPL v3

included in

maintainer

get in touch

modules/mmseqs_createtsv

Description

Input

meta:map

db_result:directory

meta2:map

db_query:directory

meta3:map

db_target:directory

Output

tsv

meta:map

*.tsv:file

versions

versions.yml:file

Tools

mmseqs GPL v3

included in

maintainer

get in touch

`meta`
`:map`

`db_result`
`:directory`

`meta2`
`:map`

`db_query`
`:directory`

`meta3`
`:map`

`db_target`
`:directory`

`tsv`

`meta`
`:map`

`*.tsv`
`:file`

`versions`

`versions.yml`
`:file`

mmseqs
GPL v3