Description

Create a tsv file from a query and a target database as well as the result database

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_result{:bash}

:directory

an MMseqs2 database with result data

meta2{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_query{:bash}

:directory

an MMseqs2 database with query data

meta3{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_target{:bash}

:directory

an MMseqs2 database with target data

Output

name:type
description
pattern

tsv{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.tsv{:bash}

:file

The resulting tsv file created using the query, target and result MMseqs databases

*.{tsv}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

included in
funcscanproteinfamiliesviralmetagenome
maintainer
Github user Joon-Klaps
get in touch
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