Description

Create a tsv file from a query and a target database as well as the result database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db_result (directory)

an MMseqs2 database with result data

meta2 (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db_query (directory)

an MMseqs2 database with query data

meta3 (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db_target (directory)

an MMseqs2 database with target data

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

tsv (file)

The resulting tsv file created using the query, target and result MMseqs databases

*.{tsv}

versions (file)

File containing software versions

versions.yml
author
Github user Joon-Klaps
get in touch
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Tools

mmseqs
GPL v3

MMseqs2: ultra fast and sensitive sequence search and clustering suite

github.com/soedinglab/MMseqs2 mmseqs.com/latest/userguide.pdf https://github.com/soedinglab/MMseqs2 10.1093/bioinformatics/btw006