modules/mmseqs_databases

Download an mmseqs-formatted database

databaseindexingclusteringsearching

https://github.com/nf-core/modules/[...]/modules/nf-core/mmseqs/databases

Description

Download an mmseqs-formatted database

Input

Name (Type)

Description

Pattern

`database` (string)

Database available through the mmseqs2 databases interface - see https://github.com/soedinglab/MMseqs2/wiki#downloading-databases for details

Output

Name (Type)

Description

Pattern

`versions` (file)

File containing software versions

versions.yml

`database` (directory)

Directory containing processed mmseqs database

Tools

mmseqs
GPL v3

MMseqs2: ultra fast and sensitive sequence search and clustering suite

github.com/soedinglab/MMseqs2 mmseqs.com/latest/userguide.pdf https://github.com/soedinglab/MMseqs2 10.1093/bioinformatics/btw006