Description

Searches for the sequences of a fasta file in a database using MMseqs2

Input

name:type
description
pattern

meta:map

Groovy Map containing input fasta file information e.g. [ id:'test' ]

fasta:file

Fasta file

*.{fa,fasta}

meta2:map

Groovy Map containing database information e.g. [ id:'test' ]

db_target:directory

an MMseqs2 database with target data, e.g. uniref90

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing input fasta file information e.g. [ id:'test']

${prefix}.tsv:file

tsv file with the results of the search

*.{tsv}

versions

versions.yml:file

File containing software versions

versions.yml