Searches for the sequences of a fasta file in a database using MMseqs2
meta:map
Groovy Map containing input fasta file information e.g. [ id:'test' ]
[ id:'test' ]
fasta:file
Fasta file
*.{fa,fasta}
meta2:map
Groovy Map containing database information e.g. [ id:'test' ]
db_target:directory
an MMseqs2 database with target data, e.g. uniref90
tsv
Groovy Map containing input fasta file information e.g. [ id:'test']
[ id:'test']
${prefix}.tsv:file
tsv file with the results of the search
*.{tsv}
versions
versions.yml:file
File containing software versions
versions.yml
MMseqs2: ultra fast and sensitive sequence search and clustering suite
