Searches for the sequences of a fasta file in a database using MMseqs2
meta{:bash}
:map
Groovy Map containing input fasta file information e.g. [ id:'test' ]
[ id:'test' ]
fasta{:bash}
:file
Fasta file
*.{fa,fasta}
meta2{:bash}
Groovy Map containing database information e.g. [ id:'test' ]
db_target{:bash}
:directory
an MMseqs2 database with target data, e.g. uniref90
tsv{:bash}
Groovy Map containing input fasta file information e.g. [ id:'test']
[ id:'test']
${prefix}.tsv{:bash}
tsv file with the results of the search
*.{tsv}
versions_mmseqs{:bash}
${task.process}{:bash}
:string
The name of the process
mmseqs{:bash}
The name of the tool
mmseqs version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
MMseqs2: ultra fast and sensitive sequence search and clustering suite
