Searches for the sequences of a fasta file in a database using MMseqs2
meta
:map
Groovy Map containing input fasta file information e.g. [ id:'test' ]
[ id:'test' ]
fasta
:file
Fasta file
*.{fa,fasta}
meta2
Groovy Map containing database information e.g. [ id:'test' ]
db_target
:directory
an MMseqs2 database with target data, e.g. uniref90
tsv
Groovy Map containing input fasta file information e.g. [ id:'test']
[ id:'test']
${prefix}.tsv
tsv file with the results of the search
*.{tsv}
versions_mmseqs
${task.process}
:string
The name of the process
mmseqs
The name of the tool
mmseqs version
:eval
The expression to obtain the version of the tool
versions
MMseqs2: ultra fast and sensitive sequence search and clustering suite
