Description

Search and calculate a score for similar sequences in a query and a target database.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

query_db (directory)

an MMseqs2 database with query data

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

target_db (directory)

an MMseqs2 database with target data, e.g. uniref90

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

an MMseqs2 database with search results

maintainer
Github user Joon-Klaps
get in touch
Ask a question on Slack Open an issue on GitHub

Tools