Description

Search and calculate a score for similar sequences in a query and a target database.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_query{:bash}

:file

Query database

meta2{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_target{:bash}

:file

Target database

Output

name:type
description
pattern

db_search{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

${prefix}/{:bash}

:directory

an MMseqs2 database with search results

versions_mmseqs{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Tools

maintainer
Github user Joon-Klaps
get in touch
Ask a question on Slack Open an issue on GitHub