Description

Search and calculate a score for similar sequences in a query and a target database.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

query_db (directory)

an MMseqs2 database with query data

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

target_db (directory)

an MMseqs2 database with target data, e.g. uniref90

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

an MMseqs2 database with search results

author
Github user Joon-Klaps
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

mmseqs
GPL v3

MMseqs2: ultra fast and sensitive sequence search and clustering suite

github.com/soedinglab/MMseqs2 mmseqs.com/latest/userguide.pdf https://github.com/soedinglab/MMseqs2 10.1093/bioinformatics/btw006