Description

Computes the lowest common ancestor by identifying the query sequence homologs against the target database.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_query{:bash}

:directory

An MMseqs2 database with query data

db_target{:bash}

:directory

an MMseqs2 database with target data including the taxonomy classification

Output

name:type
description
pattern

db_taxonomy{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

${prefix}_taxonomy{:bash}

:directory

An MMseqs2 database with target data including the taxonomy classification

versions_mmseqs{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Tools

included in
funcscan
maintainer
Github user darcy220606
get in touch
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